Setting up circadiaBase Docker
A step-by-step guide to spinning up the Circadia Lab’s reproducible research environment — JupyterLab and RStudio Server in a single Docker Compose stack — for chronobiology and actigraphy research.
Circadia
About us
We are an interdisciplinary group spanning the School of Computer Science and the School of Psychology at Northumbria University. Our research focusses on the intersection of physics, computer science, physiology and chronobiology. We are particularly interested in sleep, rhythmicity, and medical signals of various modalities.
The word “Circadia” derives from the Latin “circa diem” meaning “around the day”, a reference to the circadian rhythms that govern our lives and the focus of our research. It also rhymes with “arcadia” - a place for exploration, discovery and learning.
Our tools & software
Sleep Diaries
Structured digital sleep diary for research and clinical use
App →
ScoreMe
Scoring and interpretation of validated sleep questionnaires
App →
slumbR
R package for sleep data analysis and visualisation
R pkg →
tallieR
R package for importing, scoring, and analysing ScoreMe questionnaire data
R pkg →Circadia Docker
Reproducible research environment for chronobiology
Infra →